Typically the PEAK sifs are input into CII. Depending on the CII version, you can input both the Primary and Secondary (fatigue, "peak') sifs. The difference in the Code value may be affected by pressure input. FEbend may be a better choice than FEpipe since some functions are more automated.

p.s. call me internally if you want to discuss further.
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Bob Zimmerman, P.E.
Vice President of The Piping Stress International Association (The PSI)