All centrelines get shown, even if they are hidden. We do something similar to Devin and leave our paperspave VP's live and hidden. If we need CL's, we rep the CL's and clean them up.
A nice express tool to use is OVERKILL. It will remove lines under lines and join ones that are connected. This might help when you have to trim lines since every pipe and fitting gets a CL.
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Rod Abbott , A.Sc.T.