Wow
1 at a time.....
Q1
Is it wrong for me to have only W+P1 and exclude the H (for the hanger I have)?
A1
Yes, the H is for the spring or constant support force by not including the H you have in essence deleted these supports in that load case.... Hence if your system was supported only by springs / constants you would have a completely unsupported system.
Q2
Another thing is given a U-bolt that allows the pipe to move axially... does me specifying a restraint of +Y with 2mm gap and a GUIDE with 2mm gap for that node represents a fair model of this restraint?
A2 The 2 mm gap you have called out will allow the pipe to sag 2 mm downwards before it "touches" the support in essence removing it as a support. If you want to model the upwards restraint call out a -Y with 2mm gap, along with a + y of no gap.
Summation...
Pickles you seem like a good guy in a [censored] situation you have been thrown into deep water with no swimming lessons ahead of time.... Tell your boss you feel uncomfortable and tell him you need training, as well as an experienced person to at least review your work for sanity!!!
The use of a computer solution by inexperienced persons working alone is fraught with negative outcomes!
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Best Regards,
John C. Luf