1) If you change the input, your results are invalid. CAESAR II doesn't know this, so we set things up so that if you Error Check the input, the software deletes all the output. (Anything else and you'd erroneously use the output that doesn't go with the input.) This is why the software is asking you to re-run, there is no output.
2) "Yes" and "No". Version 5.00 zips all the component files into the "CAESAR II" archive. This is really the only job file you need to save now. The documentation for the component files is still there, because the files still exist (in the archive) and in the directory when a CAESAR II module is running.
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Regards,
Richard Ay - Consultant