In response to your questions above:
1) Correct, the data supplied with CAESAR II is for metallic bellows. You should contact a probable vendor and ask for some ball-park stiffnesses.
2) Again I would contact the specific vendor you may deal with to discuss this.
3) There are examples of tie-rods in the Applications Guide. In short, you can go with the simple model with uses a rigid rod in the center of the joint. (Granted this is not physically possible, but it works numerically.)
4) This is an operational question. I would discuss this one with your pump vendor to obtain buy-in.
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Regards,
Richard Ay - Consultant