Dale,
By default the input, output and intermediate files are compressed into a single archive (just like a zip file) in both PV Elite and CodeCalc. Now, the directory structure is much cleaner and this helps us out when providing technical support. When we are sent the compressed archive, all the files come along with it.
If you do not like this behavior, it can be turned off in Tools->Configuration Default Value Settings, <b>Do not Compress the Input Files</b> checkbox. In CodeCalc it is Tools->Configuration Miscellaneous tab.
I hope this helps.
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Scott MayeuxCADWorx & Analysis Solutions
Intergraph Process, Power, & Marine