That is a bug in the software. The same dialog form is used for all nozzle types (API-650, WRC-297, and PD-5500). Those fields that you noticed changed correspond to the WRC-297 direction cosines. So when you rotated the model, the software changed the cosines (which unfortunately changed some of the data in the API-650 data set.
If you're finished rotating the model, just correct the API-650 data and you should be good to go. This problem is corrected in Version 5.30.
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Regards,
Richard Ay - Consultant