By default for B31.4, where FAC=0.001, CAESAR II will include the direct axial stress in the expansion stress calculation. The paragraph in the Code (419.6.4(c)) does not indicate this increase in calculated stress. But this paragraph also applies this equation: "for those portions of the piping system without substantial axial restraint". Well, is the line restrained axially or not? With FAC=0.001 we're kind of letting the calculations determine this. The Code has "restrained" lines and "unrestrained" lines but no "maybe it is restrained" lines.
If you do not want to include the axial stress term, you can either change FAC to 0 for these elements or change the Configuration parameter "Add F/A in Stresses" to "No" (under SIFs and Stresses).
I cannot, at this time, state how these changes will affect other stress calculations.
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Dave Diehl