The buried pipe modeler adds more nodes and (soil) restraints at those and existing nodes. The program will also zero out all densities of buried sections.
While reverting back to the original, unburied model would be best, you can work your geometry changes into the existing buried model and simply rebury it. The modeler will remove all restraints in the buried section and then insert the new set of (soil) restraints. You will have some extra nodes but the model should still be valid.
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Dave Diehl